miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|125604592|gb|EL555143.1|EL555143 AAAATAAACATTTAAAATAGCTTTATTGTGATTTGTTTAATTATACAAATATATTAATTATAAATTGGACAAAAGTGGAA
TACTGCAATGATTGAAAGATATTTAAGAGTGGTGTATTGCTATGTGTAATACATTTAGATTTTTAAATGTTAATTGCATG
TCTCATTGGTTTGATTTGCTTGTTGATTTGTGATGAGATTTACATGGCACTTATCCTGTGAACTGAACGTCTGTCCCAAT
CAGCATGTAGTCCTTCAGGACCTGCAGCTGAGTGTTGACAAGGTTCATCTTTCCAATAGAGGGAAGGGGAAAACCCTTCT
CTAGGCGAGCATTGACCATTGGTATCACAGCCACTTTCAGGACCATCAGGAAGATGTTGTCAAGAGATCGAACCTGAAAC
TGTCCCACATAACTCGTTTCCAGAGTCATCTCAATTTTGTTCAGAGTGACAGCCCCGGCCAACTTCACCCCGGTCACGTA
CAGTCGAGCACTGACACTACCCTCCATATTGAGGACGAAGAGGGGAGAGAGGGTGGTGTTGGGCTGGATGGCGTAGGCCG
TCACGCTGCCACTGGCCTGGACAGTCACGTTGTTGGGCTCAAAGAAGATGGTGGGCTCTTTCACCGTCTTCACCAGCAGC
TTCATCATCATGCTAGGGAAATGCTTGGCTATCTCT




Most similar to sp|P17453|BPI_BOVIN

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|P17453|BPI_BOVIN Bactericidal permeability-increasing protein
           OS=Bos taurus GN=BPI PE=2 SV=2
          Length = 482

 Score =  102 bits (253), Expect = 3e-21
 Identities = 52/153 (33%), Positives = 89/153 (58%)
 Frame = -2

Query: 675 EIAKHFPSMMMKLLVKTVKEPTIFFEPNNVTVQASGSVTAYAIQPNTTLSPLFVLNMEGS 496
           ++AK FP M M+L +     P +  +P+ + +       A+AI PN++L PLF+L M  +
Sbjct: 330 QVAKMFPDMQMQLFIWASLPPKLTMKPSGLDLIFVLDTQAFAILPNSSLDPLFLLEMNLN 389

Query: 495 VSARLYVTGVKLAGAVTLNKIEMTLETSYVGQFQVRSLDNIFLMVLKVAVIPMVNARLEK 316
           +S  +     +L G + L+K+ + L+ S +G F V SL ++   V+   V+P++N +L+K
Sbjct: 390 LSVVVGAKSDRLIGELRLDKLLLELKHSDIGPFSVESLQSVINYVMPTIVLPVINKKLQK 449

Query: 315 GFPLPSIGKMNLVNTQLQVLKDYMLIGTDVQFT 217
           GFPLP    + L N  LQ  +D++L G DV ++
Sbjct: 450 GFPLPLPAYIELFNLTLQPYQDFLLFGADVHYS 482